FULL PRODUCT VERSION :
java version "1.8.0_73"
Java(TM) SE Runtime Environment (build 1.8.0_73-b02)
Java HotSpot(TM) 64-Bit Server VM (build 25.73-b02, mixed mode)

ADDITIONAL OS VERSION INFORMATION :
Windows 7 x64

A DESCRIPTION OF THE PROBLEM :
When there is a ProgressIndicator in a scene marked as Indeterminated and a parent is set visible= false the transition runs.

REGRESSION.  Last worked in version 7u80

ADDITIONAL REGRESSION INFORMATION: 
After the listeners refactoring in ProgressIndicatorSkin it was removed a listener to impl_treeVisibleProperty() that was handling the visibility also of the parents.

STEPS TO FOLLOW TO REPRODUCE THE PROBLEM :
Run the code provided.

EXPECTED VERSUS ACTUAL BEHAVIOR :
EXPECTED -
No transtion runs.
ACTUAL -
Transition runs.

ERROR MESSAGES/STACK TRACES THAT OCCUR :
In big applications running in 4k Monitors with JFXPanels produces OutOfMemoryExceptions.

REPRODUCIBILITY :
This bug can be reproduced always.

---------- BEGIN SOURCE ----------
public class JFXMain extends Application{

    @Override
    public void start(Stage primaryStage) throws Exception {
        HBox root = new HBox();
        ToggleButton toggleButton = new ToggleButton();
        ProgressIndicator progressIndicator = new ProgressIndicator(ProgressIndicator.INDETERMINATE_PROGRESS);
        StackPane stackPane = new StackPane(progressIndicator);
        stackPane.visibleProperty().bind(toggleButton.selectedProperty());
        root.getChildren().addAll(toggleButton, stackPane);
        primaryStage.setScene(new Scene(root));
        primaryStage.show();
    }
}

---------- END SOURCE ----------

CUSTOMER SUBMITTED WORKAROUND :
Remove all ProgressInidicators.

Creating a StackPane als wrapper of a ProgressIndicator that was removed and added depending on the tree visibility was not always enough because the nodes are saved also in the durty list.